What Makes for the Best Small Business Payroll Software

The best small business payroll software is able to deliver on a number of different business priorities. Getting the best program should include:

  • Optimal security to avoid embezzlement of funds or obtaining of proprietary information about the size and structure of your payroll
  • Accommodations for structured, multi-option retirement plans and health benefits for individual employees and family plans
  • Accessibility and dependable performance

 

Advanced Micro Solutions’ Payroll Software is an add-on module to our base program and allows you to enter payroll and non-employee compensation by check throughout the year.

 

Is the Best Payroll Software Affordable?

The short answer is, it can be. Here is a rundown of the features available with AMS Payroll, the best small business payroll software and our most powerful software module.

  • Direct deposit processing and paycheck printing
  • Processes payroll “live” and after-the-fact
  • Supports federal, state, and local payroll tax calculations (includes federal and state tax tables, filing requirements, and SUI forms)
  • Supports up to 1,999 payers and up to 9,999 employees/contractors per payer
  • Network and multiple PC installation (with purchase of site license)
  • 40 User Defined Fields for customized payroll operations
  • E-file Forms 940, 941, and/or 944
  • Certified payroll reports and client letter formatting

 

Additional Payroll Software Features to Look For

The best small business payroll software should handle the payroll needs of mom-and-pop stores and larger companies in labor-intensive industries. Some of these companies hit the crucial 50-employee mark long before they might ever be considered corporate giants.

 

We developed the Affordable Care Act Filer to create a payroll tie-in for the businesses that fall under these filing requirements.

 

Other businesses need the ability to print their paychecks and handle direct deposit processing. Our Software Generated Forms module and the right toner will let you print out your own MICR bank checks, including over 30 different types of paychecks.

 

Get Started with AMS

Even when running payroll seems like one more thing that you do not have time to do in the day, owners of mom-and-pop businesses can benefit from taking care of their own basic payroll and tax filing needs. The key is to avoid getting swamped by overly complex payroll software.

Our W-2/1099 Forms Filer is the foundational software that creates a platform with easy, menu-driven access. Navigate weekly/monthly payroll, and quarterly and annual tax filing returns, with our incredible software resources.

If you do experience a hitch along the way, there are plenty of resources to help you work through the uncertainty or payroll management problem. Troubleshoot most issues easily enough on your own with our FAQ section.

 

Frequently Asked Questions

 

For stickier problems, contact our support team through email, our Live Chat feature when it is active, or by calling (405) 340-0697. You also may want to learn a little more about the software solutions before making final decisions. We encourage you to sign up for a free software demo, or talk to our Sales and Information team at (800) 536-1099.

 

This article was updated on May 8, 2026 to keep its information as fresh as possible. We update this article every six months, before and after tax season, to keep current with any changes.

Software Solutions from AMS

Our W-2 and 1099 Forms Filer is our only required platform. From there, users pick the services they need. Choose from the tools below to build out your customized accounting software.